All the usual problems you expect with lists like these.

• Franchises represented by their first or most ubiquitous game rather than their best (or better yet, all of them that deserve it making the list)
• Recency bias toward games that likely won’t be recognized as this good 5 years from now.
• Missing entries so egregious that almost anyone would agree they belong on the list (see the lack of Symphony of the Night, for example).
• Arguably too much weight put on storytelling.
• (most importantly) The items above being applied randomly and inconsistently.